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Use this portal to explore summary data or to query your favorite SNP, gene, or phenotype!
Read the H2P2 paper at
Cell Host & Microbe
Phenotypic Associations
Query/Filter
Results: SNP Details
Results: Phenotype X Genotype Plot
Results: Individual LCL Data
1. Specify phenotype, SNP, gene, and/or position
Phenotype
All
Cells_ml_after_3_days
Chlamydia_27hr_cell_death_BG_subtracted
Chlamydia_27hr_GFP
Chlamydia_27hr_medianGFP
Chlamydia_46hr_GFP
Chlamydia_46hr_highGFP
Chlamydia_70hr_cell_death_BG_sub
Chlamydia_70hr_GFP
Chlamydia_70hr_median_GFP
Chlamydia_Intercellular_Spread_70hr_27hr_GFP
Chlamydia_Replication_Permisiveness_high_GFP_46hr_total_GFP_27hr
FGF2_Candida
FGF2_Mucor
FGF2_Uninfected
IFNA2_Chlamydia
IFNA2_Uninfected
IFNG_Chlamydia
IFNG_Uninfected
IL10_Chlamydia
IL10_Uninfected
IL12P70_Chlamydia
IL12P70_Uninfected
IL13_Chlamydia
IL13_Uninfected
IL1RA_Chlamydia
IL1RA_Uninfected
IL4_Chlamydia
IL4_Uninfected
IL6_Chlamydia
IL6_Uninfected
IL8_Chlamydia
IL8_Uninfected
IP10_Chlamydia
IP10_Uninfected
MDC_Chlamydia
MDC_Uninfected
MIP1B_Chlamydia
MIP1B_Uninfected
PDGF_AB_BB_Chlamydia
PDGF_AB_BB_Uninfected
RANTES_Chlamydia
RANTES_Uninfected
S_typhi_3_5hr_GFP
S_typhi_3_5hr_median_GFP
S_typhi_cell_death_BG_subtracted
S_typhi_Intracellular_Survival_24hr_3_5hr_GFP
S_typhi_Replication_24_3_5hr_median_GFP
S_typhimurium_3_5hr_GFP
S_typhimurium_3_5hr_median_GFP
S_typhimurium_cell_death_BG_subtracted
S_typhimurium_IL10_cell_uninfected_sub_fg_ml_cell
S_typhimurium_IL10_pg_ml
S_typhimurium_Intracellular_Replication_24_3_5hr_median_GFP
S_typhimurium_Intracellular_Survival_GFP_24hr_3_5hr
S_typhimurium_IP_10_pg_ml
S_typhimurium_MDC_pg_ml
sifA_3_5hr_GFP
sifA_3_5hr_median_GFP
sifA_cell_death_BG_subtracted
sifA_Intracellular_Survival_24hr_3hr_GFP
sifA_Replication_24_3_5hr_median_GFP
Staph_toxin_cell_death_BG_subtracted
TNFa_Chlamydia
TNFa_Uninfected
TNFb_Chlamydia
TNFb_Uninfected
Toxo_48hr_released_toxo_concentration
Toxo_5hr_cell_death_BG_sub
Toxo_5hr_gfp
Toxo_5hr_median
Toxo_replication_30_5hr_median_GFP
Toxo_spread_30hr_5hr_GFP
Uninfected_cell_death_3_5hr
Uninfected_IL10_pg_ml
Uninfected_IP_10_pg_ml
Uninfected_MDC_pg_ml
VEGF_Chlamydia
VEGF_Uninfected
X3_day_viability
rsID (list of semicolon separated IDs, empty = All)
Gene (list of semicolon separated IDs, empty = All)
Genomic Location (hg19):
Chromosome
Start Position
End Position
2. Filter
SNP Sub-type
All
downstream
exonic
exonic;splicing
intergenic
intronic
ncRNA_exonic
ncRNA_exonic;splicing
ncRNA_intronic
ncRNA_splicing
splicing
upstream
upstream;downstream
UTR3
UTR5
UTR3;UTR5
eQTL
-log
10
(p) Lower Bound
-log
10
(p) Upper Bound
Records to return
3. Review
Query and Review
Query and Save
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Include Populations:
All
ESN
IBS
GWD
KHV
Panel by Population
log-2 Transform
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